Latest recommendations
Id | Title * | Authors * | Abstract * | Picture * | Thematic fields * | Recommender▲ | Reviewers | Submission date | |
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24 Mar 2023
Identifying pesticide mixtures at country-wide scaleMilena Cairo, Anne-Christine Monnet, Stéphane Robin, Emmanuelle Porcher, Colin Fontaine https://hal.science/hal-03815557An original approach for the identification of relevant pesticides mixtures at nationwide scaleRecommended by Pierre Labadie based on reviews by Patrice Couture and Clémentine FRITSCHOver the last decades, pesticides have been massively used in agriculture and their impacts on both the environment and human health are a major growing concern (Humann-Guilleminot et al., 2019; 2019 Boedeker et al., 2020). Improving the prediction of wildlife exposure to pesticides and the associated impacts on ecosystems is therefore crucial. In general, ecotoxicological studies addressing the effects of pesticides include compounds that are selected based on general use over large areas (e.g. regions, country) or specific crop types. Such a selection does not necessarily reflect the mixtures to which species of wildlife are exposed in a particular ecosystem. In this context, Cairo et al. (2023) present an original approach to identify relevant mixtures of current-use pesticides. Their approach relies on public data concerning pesticide sales and cropping, available at a nationwide scale in France and at a relatively high resolution (i.e. postcode of the buyer). Based on a number of clearly exposed and discussed assumptions (e.g. “pesticides were used in the year of purchase and in the postcode of purchase”), their approach allowed for identifying 18 groups that were discriminated by a reduced number of pesticides. Some compounds were found in most or all groups and were termed “core substances” (e.g. deltamethrin and lambda-cyhalothrin). Other compounds, however, were associated with a limited number of groups and termed “discriminant substances” (e.g. boscalid and epoxiconazole). The authors identified groups of molecules that are probably associated with the same mixtures, which warrants the investigation of potential synergetic effects. In addition, their approach allowed for the identification of areas where aquatic biota may be exposed to similar mixtures, which is might prove of interest to further investigate in situ the actual impacts of pesticide mixtures on ecosystems. Note that the approach taken by the authors might be applied by others in other countries, provided a database of pesticide sales is available. REFERENCES Boedeker W, Watts M, Clausing P, Marquez E (2020) The global distribution of acute unintentional pesticide poisoning: estimations based on a systematic review. BMC Public Health, 20, 1875. https://doi.org/10.1186/s12889-020-09939-0 Cairo M, Monnet A-C, Robin S, Porcher E, Fontaine C (2023) Identifying pesticide mixtures at country-wide scale. HAL, ver. 2 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://hal.science/hal-03815557 Humann-Guilleminot S, Tassin de Montaigu C, Sire J, Grünig S, Gning O, Glauser G, Vallat A, Helfenstein F (2019) A sublethal dose of the neonicotinoid insecticide acetamiprid reduces sperm density in a songbird. Environmental Research, 177, 108589. https://doi.org/10.1016/j.envres.2019.108589 | Identifying pesticide mixtures at country-wide scale | Milena Cairo, Anne-Christine Monnet, Stéphane Robin, Emmanuelle Porcher, Colin Fontaine | <p style="text-align: justify;">Wild organisms are likely exposed to complex mixtures of pesticides owing to the large diversity of substances on the market and the broad range agricultural practices. The consequences of such exposure are still po... | Environmental pollution, Environmental risk assessment, Method standardization, Other | Pierre Labadie | Clémentine FRITSCH, Patrice Couture | 2022-10-14 17:13:06 | View | |
21 Jan 2025
![]() Do macroinvertebrate abundance and community structure depend on the quality of ponds located in peri-urban areas?Florence D. Hulot, Christophe Hanot, Sylvie Nélieu, Isabelle Lamy, Sara Karolak, Ghislaine Delarue, Emmanuelle Baudry https://hal.science/hal-04850220v1Integrating chemical and biological assessments to understand the impact of pollutants on freshwater biodiversity in model systems such as peri-urban pondsRecommended by Pierre Labadie based on reviews by Aurélie GOUTTE and 2 anonymous reviewersPonds, as small freshwater ecosystems, are particularly vulnerable due to their limited size. Yet they are often overlooked in research, possibly because they are considered less important (Biggs et al., 2017). Shallow water bodies support higher biodiversity than larger aquatic ecosystems. Peri-urban areas, characterized by a blend of agricultural and urban land uses, are dynamic and constantly evolving landscapes with diverse activities and stakeholders (Zoomers et al., 2017); as such, they are referred to as "restless landscapes" or zones of continual transformation (Zoomers et al., 2017). They often harbor neglected ecosystems, and despite their ecological importance, ponds and wetlands in peri-urban areas remain relatively underexplored (Wanek et al., 2021). Furthermore, these areas may experience increased contaminant inputs, which are regarded as one of the 12 major threats to freshwater biodiversity (Reid et al., 2019). In this context, Hulot et al. (2025) monitored 12 peri-urban ponds in the Île-de-France region (near Paris, France) to investigate the relationships between land use, pollutant concentrations in water and sediment, and macroinvertebrate distribution. The originality of this work lies in its multidisciplinary and integrated approach, combining ecological and chemical analyses. While assessing agricultural, urban, grassland, and forest landscapes surrounding each pond, this study aimed to understand how contaminants constrain macroinvertebrate communities. The authors hypothesized that i) ponds in grassland and forest environments support higher local diversity than those in agricultural or urban areas, ii) rare and pollution-sensitive species significantly contribute to regional diversity, and iii) contaminants in water and sediment influence the distribution of macroinvertebrate morphotaxa. This study provides numerous novel results. Specifically, it demonstrates that fluctuations in morphotaxa composition are predominantly driven by species replacement rather than by disparities in species richness. This pattern was largely attributed to the high prevalence of pollutant-tolerant species in certain ponds. In addition, community compositions appeared to be influenced by sediment levels of pharmaceuticals, water conductivity, and ammonium concentrations. In summary, ponds located in peri-urban areas are subject to a range of human-induced disturbances, and these results suggest that these disturbances lead to chronic and varied contamination, which in turn affects the composition of morphotaxa communities. These findings establish a clear connection between local pollution and ecological composition, a crucial aspect for effective conservation and restoration efforts on peri-urban ponds.
References
Biggs, J., S. von Fumetti, Kelly-Quinn M. (2017). The importance of small waterbodies for biodiversity and ecosystem services: implications for policy makers. Hydrobiologia 793(1): 3-39 625. https://doi.org/10.1007/s10750-016-3007-0 Hulot, F.D., Hanot, C., Nélieu, S., Lamy, I., Karolak, S., Delarue, G., Baudry E., (2024) Do macroinvertebrate abundance and community structure depend on the quality of ponds located in peri-urban areas? ver.3 peer-reviewed and recommended by PCI Ecotoxicology and Environmental Chemistry. https://hal.science/hal-04850220v1 Reid, A. J., A. K. Carlson, I. F. Creed, E. J. Eliason, P. A. Gell, P. T. J. Johnson, 712 K. A. Kidd, T. J. MacCormack, J. D. Olden, S. J. Ormerod, J. P. Smol, W. W. Taylor, K. Tockner, J. C. Vermaire, D. Dudgeon, Cooke, S. J. 2019. Emerging threats and persistent conservation challenges for freshwater biodiversity. Biological Reviews 94(3):849-873. https://doi.org/10.1111/brv.12480 Wanek, A., C. L. M. Hargiss, J. Norland, Ellingson, N. 2021. Assessment of water quality in ponds across the rural, peri-urban, and urban gradient. Environmental Monitoring and Assessment 193: 694. https://doi.org/10.1007/s10661-021-09471-7 Zoomers, A., F. van Noorloos, K. Otsuki, G. Steel, van Westen, G. 2017. The Rush for Land in anUrbanizing World: From Land Grabbing Toward Developing Safe, Resilient, and Sustainable Cities and Landscapes. World Dev 92:242-252. https://doi.org/10.1016/j.worlddev.2016.11.016 | Do macroinvertebrate abundance and community structure depend on the quality of ponds located in peri-urban areas? | Florence D. Hulot, Christophe Hanot, Sylvie Nélieu, Isabelle Lamy, Sara Karolak, Ghislaine Delarue, Emmanuelle Baudry | <p style="text-align: justify;">Contamination is one of the major threats to freshwater biodiversity. Compared to other aquatic ecosystems, peri-urban ponds are unique because they are embedded in human-dominated areas. However, it is poorly under... | ![]() | Aquatic ecotoxicology, Ecosystem Health, Environmental pollution | Pierre Labadie | 2023-10-26 16:37:22 | View | |
17 Dec 2024
![]() Exposure of wild mammals to glyphosate, AMPA, and glufosinate: a case for “emerging organic contaminants”?Clémentine Fritsch https://hal.science/hal-04485797The widespread detection of glyphosate, AMPA, and glufosinate in rodents and shrews from French agricultural landscapes underscores significant concerns about their potential toxicological impacts in non-target organismsRecommended by Pierre Labadie based on reviews by Sabrina Tartu and 3 anonymous reviewersPesticides give rise to considerable concern due to their impact on biodiversity. Amongst the vast range of compounds used as herbicides, glyphosate (GLY) is the most widely applied one at global scale and its transformation product, aminomethylphosphonic acid (AMPA) is also ubiquitous. However, the toxicity of these chemicals on non-target organisms, including mammals, is somewhat overlooked (Kissane et al., 2017). Beside these two chemicals, Fritsch et al. (2024) also considered another organophosphorus herbicide, i.e. glufosinate (GLUF). Their study examined exposure levels in rodents and shrews living in contrasted cropped and semi-natural habitats in France – i.e., conventional farmland, organic fields, and hedgerows – through the analysis of herbicide residues in their hair. The hypothesis that herbicide residues in hair reflect the exposure to multiple pesticides in wildlife is supported by several papers (i.e. Krief et al. 2017; Fritsch et al. 2022). Results obtained by Fritsch et al. (2024) indicated that the target compounds were widespread in the investigated environments, i.e. GLY, AMPA, and GLUF were detected in 64%, 51%, and 44% of samples, respectively. Diet appeared as a major driver of contamination, as herbivorous and omnivorous voles exhibited higher contamination levels than insectivorous or omnivorous species such as shrews and wild mice. In addition, habitat was also a significant factor: GLY concentrations were particularly high in individuals collected from hedgerows, surpassing those found in crop fields. This unexpected result highlights the contamination of areas considered as ecological refuges for the investigated species. Exposure levels did not show clear differences across sites, based on farming practices or pesticide application intensity. In addition, the measured concentrations of GLY (median 2.7 pg/mg), AMPA (median 1.4 pg/mg), and GLUF (median 3.5 pg/mg) frequently reached thresholds associated with toxic effects on small mammals. In worst case scenarios, exceedance percentages attained values as high as 94 %. Altogether, these results definitely raise concerns about the potential impact of GLY, AMPA and GLUF on non-target wildlife species and populations. These findings by Fritsch et al. (2024) therefore emphasize the widespread presence of these chemicals in agricultural landscapes and question the safety of herbicide use, even in habitats meant to protect biodiversity. This study underscores the need for more comprehensive evaluation of the ecological effects of herbicides to guide policy and conservation efforts.
References Kissane Z, Shephard JM (2017) The rise of glyphosate and new opportunities for biosentinel early-1068 warning studies. Conservation Biology 31: 1293–1300; https://doi.org/10.1111/cobi.12955 Krief S, Berny P, Gumisiriza F, Gross R, Demeneix B, Fini JB, et al. (2017) Agricultural expansion as risk to endangered wildlife: Pesticide exposure in wild chimpanzees and baboons displaying facial dysplasia. Science of the Total Environment 598:647–656; 1072; https://doi.org/10.1016/j.scitotenv.2017.04.113 Fritsch C, Appenzeller BM, Burkart L, Coeurdassier M, Scheifler R, Raoul F, et al. (2022) Pervasive exposure 1041 of wild small mammals to legacy and currently used pesticide mixtures in arable landscapes. 1042 Sci Rep 12:15904; https://doi.org/10.1038/s41598-022-19959-y Fritsch C, Appenzeller BM, Bertrand C, Coeurdassier M, Driget V, Hardy EM, Palazzi P, et al. (2024) Exposure of wild mammals to glyphosate, AMPA, and glufosinate: a case for “emerging organic contaminants”?. HAL, ver.3 peer-reviewed and recommended by PCI Ecotoxicology and Environmental Chemistry https://hal.science/hal-04485797 | Exposure of wild mammals to glyphosate, AMPA, and glufosinate: a case for “emerging organic contaminants”? | Clémentine Fritsch | <p>Glyphosate (GLY) is the most widely used herbicide worldwide, and its use continues to increase. Accumulating evidence shows that GLY and its metabolite aminomethylphosphonic acid (AMPA) are more persistent and toxic than expected, but little i... | ![]() | Bioaccumulation/biomagnification, Biomonitoring, Environmental pollution, Environmental risk assessment, Legacy and emerging contaminants | Pierre Labadie | 2024-03-01 15:15:54 | View | |
18 Jan 2022
Machine learning models based on molecular descriptors to predict human and environmental toxicological factors in continental freshwaterRémi Servien, Eric Latrille, Dominique Patureau, Arnaud Hélias https://doi.org/10.1101/2021.07.20.453034Predicting characterization factors of chemical substances from a set of molecular descriptors based on machine learning algorithmsRecommended by Sandrine CHARLESToday, thousands of chemical substances are released into the environment because of human activities. It is thus crucial to identify all relevant chemicals that contribute to toxic effects on living organisms, also potentially disturbing the community functioning and the ecosystem services that flow from them. Once identified, chemical substances need to be associated with ecotoxicity factors. Nevertheless, getting such factors usually requires time-, resources- and animal-costly experiments that it should be possible to avoid. In this perspective, modelling approaches may be particularly helpful if they rely on easy-to-obtain information to be used as predictive variables. Within this context, the paper of Servien et al. (2022) illustrates the use of machine learning algorithms to predict toxicity and ecotoxicity factors that were missing for a collection of compounds. Their modelling approach involve a collection of molecular descriptors as input variables. A total of 40 molecular descriptors were extracted from the TyPol database (Servien et al., 2014) as those describing the best how organic compounds behave within the environment. These molecular descriptors also have the advantage to be easily quantifiable for new chemical substances under evaluation. The performances of the proposed models were systematically checked and compared to the classical linear partial least square method, based on the calculation of the absolute error (namely, the difference between prediction and true value). This finally led to different best models (that is associated to the lowest median absolute error) according to the classification of the 526 compounds comprised in the TyPol database in five clusters. These five clusters of different sizes gather chemical substances with different but specific molecular characteristics, also corresponding to different estimates of the characterization factors both in their median and within-variability. In a final step, predictions of characterization factors were performed for 102 missing values in the USEtox® database (Rosenbaum et al., 2008) but also referenced in TyPol. This paper highlights that the molecular descriptors that explain the most the toxicity of the chemical substances in each cluster strongly differ. Nevertheless, these predictions, whatever the cluster, appear precise enough to be considered as relevant despite everything. As a conclusion, this paper is a promising proof-of-concept in using machine learning modelling to go beyond some constraints around the toxicity evaluation of chemical substances, especially handling non-linearities and data-demanding calculations, in in an ever-changing world that is gradually depleting its resources without sufficient concern for the short-term risks to the environment and human health. References Rosenbaum RK, Bachmann TM, Gold LS, Huijbregts MAJ, Jolliet O, Juraske R, Koehler A, Larsen HF, MacLeod M, Margni M, McKone TE, Payet J, Schuhmacher M, van de Meent D, Hauschild MZ (2008) USEtox—the UNEP-SETAC toxicity model: recommended characterisation factors for human toxicity and freshwater ecotoxicity in life cycle impact assessment. The International Journal of Life Cycle Assessment, 13, 532. https://doi.org/10.1007/s11367-008-0038-4 Servien R, Latrille E, Patureau D, Hélias A (2022) Machine learning models based on molecular descriptors to predict human and environmental toxicological factors in continental freshwater. bioRxiv, 2021.07.20.453034, ver. 6 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2021.07.20.453034 Servien R, Mamy L, Li Z, Rossard V, Latrille E, Bessac F, Patureau D, Benoit P (2014) TyPol – A new methodology for organic compounds clustering based on their molecular characteristics and environmental behavior. Chemosphere, 111, 613–622. https://doi.org/10.1016/j.chemosphere.2014.05.020 | Machine learning models based on molecular descriptors to predict human and environmental toxicological factors in continental freshwater | Rémi Servien, Eric Latrille, Dominique Patureau, Arnaud Hélias | <p style="text-align: justify;">It is a real challenge for life cycle assessment practitioners to identify all relevant substances contributing to the ecotoxicity. Once this identification has been made, the lack of corresponding ecotoxicity facto... | Aquatic ecotoxicology, Ecosystem Health, Environmental pollution, Modelling | Sandrine CHARLES | 2021-07-21 09:09:50 | View | ||
30 Nov 2022
![]() Chemical effects on ecological interactions within a model-experiment loopDominique LAMONICA, Sandrine CHARLES, Bernard CLÉMENT, Christelle LOPES https://doi.org/10.1101/2022.05.24.493191A model-experiment loop to optimise data requirements for ecotoxicological risk assessment with mesocosmsRecommended by Volker Grimm based on reviews by Charles Hazlerigg and Peter VermeirenIn Ecotoxicology, the toxicity of chemicals is usually quantified for individuals under laboratory conditions, while in reality individuals interact with other individuals in populations and communities, and are exposed to conditions that vary in space and time. Micro- and mesocosm experiments are therefore used to increase the ecological realism of toxicological risk assessments. Such experiments are, however, labour-intensive, costly, and cannot, due to logistical reasons, implement all possible factors or interests (Henry et al. 2017). Moreover, as such experiments often include animals, the number of experiments performed has to be minimized to reduce animal testing as much as possible. Modelling has therefore been suggested to complement such experiments (Beaudoin et al. 2012). Still, the population models of the species involved need to be parameterized and can thus require a large amount of data. However, how much data are actually needed is usually unclear. Lamonica et al. (2022) therefore focus on the challenge of “taking the most of experimental data and reducing the amount of experiments to perform”. Their ultimate goal is to reduce the number of experiments to parameterize their model of a 3-species mesocosm, comprised of algae, duckweed, and water fleas, sufficiently well. For this, experiments with one, two or three species, with different cadmium concentrations and without cadmium, are performed and used to parameterize, using the Bayesian Monte Carlo Markov Chain (MCMC) method, the model. Then, different data sets omitting certain experiments are used for the same parameterization procedure to see which data sets, and hence experiments, might possibly be omitted when it comes to parameterizing a model that would be precise enough to predict the effects of a toxicant. The authors clearly demonstrate the added value of the approach, but also discuss limits to the transferability of their recommendations. Their manuscript presents a useful and inspiring illustration of how in the future models and experiments should be combined in an integrated, iterative process. This is in line with the current “Destination Earth” initiative of the European Commission, which aims at producing “digital twins” of different environmental sectors, where the continuous mutual updating of models and monitoring designs is the key idea. The authors make an important point when concluding that “data quality and design are more beneficial for modelling purpose than quantity. Ideally, as the use of models and big data in ecology increases […], modellers and experimenters could collaboratively and profitably elaborate model-guided experiments.” References Beaudouin R, Ginot V, Monod G (2012) Improving mesocosm data analysis through individual-based modelling of control population dynamics: a case study with mosquitofish (Gambusia holbrooki). Ecotoxicology, 21, 155–164. https://doi.org/10.1007/s10646-011-0775-1 Henry M, Becher MA, Osborne JL, Kennedy PJ, Aupinel P, Bretagnolle V, Brun F, Grimm V, Horn J, Requier F (2017) Predictive systems models can help elucidate bee declines driven by multiple combined stressors. Apidologie, 48, 328–339. https://doi.org/10.1007/s13592-016-0476-0 Lamonica D, Charles S, Clément B, Lopes C (2022) Chemical effects on ecological interactions within a model-experiment loop. bioRxiv, 2022.05.24.493191, ver. 6 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2022.05.24.493191 | Chemical effects on ecological interactions within a model-experiment loop | Dominique LAMONICA, Sandrine CHARLES, Bernard CLÉMENT, Christelle LOPES | <p style="text-align: justify;">We propose in this paper a method to assess the effects of a contaminant on a micro-ecosystem, integrating the population dynamics and the interactions between species. For that, we developed a dynamic model to desc... | ![]() | Aquatic ecotoxicology, Environmental risk assessment, Modelling, Species interactions-webs | Volker Grimm | Charles Hazlerigg, Peter Vermeiren | 2022-05-30 11:05:59 | View |
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