Latest recommendations
Id | Title * | Authors * | Abstract * | Picture * | Thematic fields * | Recommender▲ | Reviewers | Submission date | |
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17 Mar 2025
Evaluating the Effects of Environmental Disturbances and Pesticide Mixtures on N-cycle related Soil Microbial EndpointsCamilla Drocco, Anja Coors, Marion Devers-Lamrani, Fabrice Martin-Laurent, Nadine Rouard, Aymé Spor https://doi.org/10.1101/2024.01.22.576671Impact of environmental disturbances and pesticides on soil microbial communities involved in the Nitrogen cyclingRecommended by Abdulsamie HananoSoil microbial communities play a crucial role in maintaining ecosystem health, driving key processes such as nutrient cycling, organic matter decomposition, and soil fertility. However, these microbial populations are highly sensitive to environmental changes and chemical stressors, including pesticides. The preprint "Evaluating the effects of environmental disturbances and pesticide mixtures on soil microbial endpoints," provides valuable insights into how soil microbial communities respond to environmental fluctuations and pesticide exposure (Drocco et al., 2025). By integrating experimental soil microcosms with targeted microbial assessments, the study offers a comprehensive view of the resilience and vulnerability of soil microbiota under multiple stress conditions. The study aimed to assess how temperature and humidity fluctuations, along with pesticide exposure, impact soil microbial communities. A total of 250 soil microcosms were subjected to three different environmental conditions: heat disturbance, high humidity simulating heavy rain, or a control with no disturbance. Following a three-day recovery period, the microcosms were exposed to different pesticide active ingredients—clopyralid (herbicide), cypermethrin (insecticide), and pyraclostrobin (fungicide)—either individually or in combination at standard (1x) and elevated (10x) agronomic doses. By evaluating microbial endpoints related to diversity and community structure, the researchers were able to determine how environmental disturbances and chemical exposure influence soil microbial functions (Bacmaga et al., 2015). Of particular interest was the focus on microbial guilds involved in nitrification, a critical process for soil nitrogen cycling and agricultural productivity (Dominati et al., 2010). The study’s findings reveal a complex interplay between environmental stressors and pesticide exposure on microbial communities. Some key observations showed that heat and high humidity significantly altered microbial diversity and composition before pesticide application. This suggests that climate-driven disturbances can precondition microbial communities, potentially influencing their subsequent responses to chemical exposure. Moreover, the pesticide effects depend on dose and combination, while individual pesticides had measurable impacts on microbial endpoints, their effects were amplified when applied in mixtures or at elevated doses. This underscores the importance of considering real-world pesticide applications, where mixtures are commonly used. Furthermore, the results indicate that the microbial guilds involved in nitrification appeared to be disproportionately affected by pesticide exposure, raising concerns about long-term soil fertility and nitrogen availability in treated soils. These findings have significant implications for sustainable agriculture and soil health management. Understanding how soil microbiota respond to environmental and chemical stressors can inform strategies to mitigate negative impacts, such as adopting precision agriculture techniques, improving pesticide formulations, and implementing soil conservation practices. Despite its valuable contributions, the study has some limitations. The controlled microcosm approach, while useful for isolating specific variables, may not fully capture the complexity of field conditions. Long-term effects of pesticide exposure were also not assessed, leaving questions about microbial recovery and ecosystem stability over extended periods. Future research should focus on field-based experiments and long-term monitoring to validate and expand on these findings. In conclusion, the current study highlights the intricate interactions between environmental stressors and pesticide exposure on soil microbial communities. By leveraging a robust experimental design and providing open-access data and statistical scripts, the research enhances our understanding of soil microbial dynamics and their implications for agricultural sustainability. As climate change and intensive pesticide use continue to shape soil ecosystems, such studies are essential for developing resilient and sustainable soil management practices. References Bacmaga, M., et al., 2015. Microbial and enzymatic activity of soil contaminated with a mixture of diflufenican + mesosulfuron-methyl + iodosulfuron-methyl-sodium. Environ Sci Pollut Res Int. 22: 643-56, https://doi.org/10.1007/s11356-014-3395-5 Dominati, E., et al., 2010. A framework for classifying and quantifying the natural capital and ecosystem services of soils. Ecological Economics. 69: 1858-1868, https://doi.org/10.1016/j.ecolecon.2010.05.002 Drocco, C., Coors, A., Devers-Lamrani, M., Martin-Laurent, F., Rouard, N., Spor A. 2025. Evaluating the Effects of Environmental Disturbances and Pesticide Mixtures on N-cycle related Soil Microbial Endpoints. ver.3 peer-reviewed and recommended by PCI Ecotoxicology and Environmental Chemistry, https://doi.org/10.1101/2024.01.22.576671 | Evaluating the Effects of Environmental Disturbances and Pesticide Mixtures on N-cycle related Soil Microbial Endpoints | Camilla Drocco, Anja Coors, Marion Devers-Lamrani, Fabrice Martin-Laurent, Nadine Rouard, Aymé Spor | <p>Pesticides are widely used in conventional agriculture, either applied separately or in combination during the culture cycle. Due to their occurrence and persistence in soils, pesticide residues may have an impact on soil microbial communities ... | Environmental risk assessment, Microbial ecotoxicology, Terrestrial ecotoxicology | Abdulsamie Hanano | 2024-01-25 07:52:47 | View | ||
04 Mar 2024
![]() Ivermectin resistance in dung beetles exposed for multiple generationsDaniel Gonzalez Tokman, Antonio Arellano Torres, Fernanda Baena-Diaz, Carlos Bustos, Imelda Martinez M https://doi.org/10.1101/2023.05.08.539900Low potential of arthropod species to aquire resistance to invermectin drug could induce a risk of extinction in contaminated pasturesRecommended by Christian MouginFor many decades, the macrocyclic lactone drug ivermectin is extensively used in veterinary medicine and agriculture, as well as human medicine. Residues of ivermectin excreted in cattle dung remain persistent in soils (Mougin et al., 2003), biologically active and threaten non-target soil and coprophagous organisms such as dung flies and beetles (Lumaret et al., 2012). Ivermectin affects highly beneficial and taxonomically diverse groups inhabiting dung pats, including flies, parasitic wasps, as well as coprophilus and predatory dung beetles (Villar et al., 2022). Ivermectin resistance is well document in insects, but it seems to take longer and to be less effective than resistance to insecticides or other antiparasitic drugs, because of different physiological mechanisms involved in resistance (Seaman et al., 2015). In that context, Gonzalez-Tokman et al. (2024) compared the reproductive success of a line of dung beetles (Euoniticellus intermedius, Scarabaeinae) exposed to a moderate concentration of invermectin during 18 generations, and a control line of beatles that was maintained free of antiparasitic drug. They carried-out toxicity experiments with increasing ivermectin concentrations to determine if sensitivity to ivermectin was reduced after some generations of exposure, possibly by acquiring resistance by means of transgenerational effects. Thus, dung beetles did not generate resistance to ivermectin after 18 generations of continuous exposure, and quantitative genetic analyses showed only low genetic variation in response to ivermectin. The results published by Gonzalez-Tokman et al. (2024) indicated a low potential of beetles for adaptation to the drug, and suggest for non-target invertebrate groups a possible risk of extinction in ivermectin-contaminated pastures. These effects can greatly impact grassland ecology, lower their quality and reduce the area available and palatable to livestock. References Mougin, C., Kollmann, A., Dubroca, J., Ducrot, P.-H., Alvinerie, M., Galtier, P., 2003. Fate of the veterinary medicine ivermectin in soil. Environ. Chem. Letters 1, 131-134. https://doi.org/10.1007/s10311-003-0032-9 Lumaret, JP., Errouissi, F., Floate, K., Römbke, J., Wardhaugh, K., 2012. A review on the toxicity and non-target effects of macrocyclic lactones in terrestrial and aquatic environments. Current Pharmaceutical Biotechnology 13(6), 1004-60. https://doi.org/10.2174/138920112800399257 Villar, D., & Schaeffer, D.J., 2022. Ivermectin use on pastured livestock in Colombia: parasite resistance and impacts on the dung community. Revista Colombiana De Ciencias Pecuarias, 36(1), 3-12. https://doi.org/10.17533/udea.rccp.v36n1a2 Seaman, J.A., Alout, H., Meyers, J.I., Stenglein, M.D., Dabiré, R.K., Lozano-Fuentes, S., Burton, T.A., 471 Kuklinski, W.S., Black, W.C., Foy, B.D., 2015. Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals. BMC Genomics 16, 797. https://doi.org/10.1186/s12864-015-2029-8 González-Tokman, D., Arellano-Torres, A., Baena-Díaz, F., Bustos, C., Martínez M., I., 2024. Ivermectin resistance in dung beetles exposed for multiple generations, bioRxiv ver. 3 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2023.05.08.539900 | Ivermectin resistance in dung beetles exposed for multiple generations | Daniel Gonzalez Tokman, Antonio Arellano Torres, Fernanda Baena-Diaz, Carlos Bustos, Imelda Martinez M | <p>Ivermectin is an antiparasitic drug commonly used in cattle, that is excreted in dung, causing lethal and sub-lethal effects on coprophagous non-target fauna. Given that cattle parasites generate resistance to ivermectin, farmers have increased... | ![]() | Ecosystem Health, Environmental pollution, Global changes, Terrestrial ecotoxicology | Christian Mougin | 2023-05-12 04:57:32 | View | |
22 Jul 2023
![]() No evidence for an effect of chronic boat noise on the fitness of reared water fleasLoïc Prosnier, Emilie Rojas, Vincent Médoc https://doi.org/10.1101/2022.11.20.517267Noise impact in Daphnia magnaRecommended by Claudia CosioOur ability to anticipate and estimate how pollution affects biota is of paramount importance in the field of ecotoxicology. Impact of chemical pollution by metals, drugs or pesticides was widely studied in different species using acute and chronic scenarios. While environmental factors such as temperature are also often considered, noise is largely ignored in these models despite the knowledge of its detrimental effects in vertebrates. Studies of noise impacts included behavior and fitness endpoints and showed no effect to death depending on intensity, frequency and the distance from the noise source (Peng et al., 2015). Nonetheless, the impact of noise in biota is not well-understood, which impairs its effective mitigation. Noise or acoustic pollution due to boat traffic produce low-frequency stationary noise. It is a pervasive and ubiquitous pollutant found in aquatic ecosystems. In this context, Prosnier et al. (2023) addresses how intermittent and random noise impacted Daphnia magna, a representative of zooplankton model, widely used in ecotoxicology. Endpoints of lifespan and clonal offspring production were measured in the presence or absence of motorboat noises, in animals reared from birth to death. Noise consisted in a playlist of 15 sounds of motorboat recorded in the Grangent lake (Loire, France). Their intensity ranged from 0 to -25 dB Re 1 μPa by 5 dB to create 75 sounds from 103 to 150 dB RMS Re 1 μPa – a range of levels occurring in lakes. Treatment had no effect on analyzed endpoints, contrary to a continuous broadband noise (100-20,000 Hz) that caused higher survival and fecundity, and reduced speed of motion compared to control (Prosnier et al., 2022). Data point that temporal (continuous, regular, random) and frequency of noise are instrumental for its effects. References Peng, C., X. Zhao and G. Liu (2015). "Noise in the Sea and Its Impacts on Marine Organisms." Int J Environ Res Public Health 12(10): 12304-12323. https://doi.org/10.3390/ijerph121012304 Prosnier, L., E. Rojas and V. Médoc (2023). "No evidence for an effect of chronic boat noise on the fitness of reared water fleas." bioRxiv: 2022. ver. 4 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2022.11.20.517267 Prosnier, L., E. Rojas, O. Valéro and V. Médoc (2022). "Chronic noise unexpectedly increases fitness of a freshwater zooplankton." bioRxiv: 2022. https://doi.org/10.1101/2022.11.19.517212 | No evidence for an effect of chronic boat noise on the fitness of reared water fleas | Loïc Prosnier, Emilie Rojas, Vincent Médoc | <p style="text-align: justify;">Among the numerous questions about human impacts on ecosystems, there is a growing interest for acoustic pollution. First studies on underwater acoustic pollution focused, and showed effects, on vertebrates’ behavio... | ![]() | Aquatic ecotoxicology, Ecosystem Health, Environmental pollution, Global changes, Life History, Other | Claudia Cosio | 2022-12-08 17:23:07 | View | |
25 Sep 2023
![]() Characterization of the bioaccumulation and toxicity of copper pyrithione, an antifouling compound, on juveniles of rainbow troutCharlotte Bourdon, Jérôme Cachot, Patrice Gonzalez, Patrice Couture https://doi.org/10.1101/2023.01.31.526498Bioaccumulation and impact of copper pyrithione impact in juveniles of rainbow troutRecommended by Claudia CosioOur ability to anticipate and estimate how pollution affects biota is intrumental in the field of ecotoxicology. Impact of chemical pollution by metals, drugs or pesticides was widely studied in different species using acute and chronic scenarios. Since the ban on tributyltin in antifouling paints, other copper (Cu)-based paints are on the market, including a new generation of booster biocides:metal pyrithiones such as Cu pyrithione (CuPT). Pyrithione acts as a Cu ionophore facilitating Cu transport across the membranes. Although some data show their occurrence in aquatic ecosystems and few studies on the toxicity of CuPT in fish are published, major gaps in knowledge remain about their toxicity and toxic pathway. Few studies were previously conducted in animals exposed to CuPT pointing to reprotoxicity, developmental malformation and mortality (Li et al. 2021, Mochida et al., 2011; Mohamat-Yusuff et al., 2018, Shin et al., 2022). However, its toxicokinetic and toxicodynamic remain to be characterized in details. In this context, Bourdon et al. (2023) compared in juveniles of rainbow trout (Oncorhynchus mykiss), the effects of exposure to CuPT and ionic Cu2+ at equivalent Cu2+ molar concentrations. Presented data allow to compare the toxicity threshold, the accumulation of Cu and mechanisms of toxicity of both compounds. Acute and chronic exposures showed a higher bioaccumulation of Cu in the gills, and a higher toxicity of CuPT than that of ionic Cu2+, e.g. mortality , transcription levels of genes related to oxidative stress, detoxification and Cu transport. Intriguingly, the activities of enzymatic biomarkers used as proxy of antioxidant capacity were not significantly altered, although Cu is generally expected to trigger oxidative stress. In conlusion, this study brings new knowledge pointing that the presence of CuPT in the environment could induce toxic effects in non-target species. Moreover, it support the need to study in detail the toxicity of Cu-based paints to adapt regulations concerning their use and release in aquatic environments. Because of its low solubility in water, CuPT is expected to adsorb to suspended matter and food pellets. Future research should study this route of exposure.
References Bourdon, C., Cachot, J., Gonzalez, P., Couture, P., 2023. Characterization of the bioaccumulation and toxicity of copper pyrithione, an antifouling compound, on juveniles of rainbow trout, bioRxiv ver. 3 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2023.01.31.526498 Li, X., S. Ru, H. Tian, S. Zhang, Z. Lin, M. Gao and J. Wang, 2021. Combined exposure to environmentally relevant copper and 2,2′-dithiobis-pyridine induces significant reproductive toxicity in male guppy (Poecilia reticulata). Science of the Total Environment 797, https://doi.org/10.1016/j.scitotenv.2021.149131 Mochida, K., Amano, H., Onduka, T., Kakuno, A., Fujii, K., 2011. Toxicity and metabolism of copper pyrithione and its degradation product, 2,2’-dipyridyldisulfide in a marine polychaete. Chemosphere 82, 390–397, https://doi.org/10.1016/j.chemosphere.2010.09.074 Mohamat-Yusuff, F., Sarah-Nabila, Ab.G., Zulkifli, S.Z., Azmai, M.N.A., Ibrahim, W.N.W., Yusof, S., Ismail, A., 2018. Acute toxicity test of copper pyrithione on Javanese medaka and the behavioural stress symptoms. Marine Pollution Bulletin 127, 150–153, https://doi.org/10.1016/j.marpolbul.2017.11.046 Shin, D., Y. Choi, Z. Y. Soon, M. Kim, D. J. Kim and J. H. Jung, 2022. Comparative toxicity study of waterborne two booster biocides (CuPT and ZnPT) on embryonic flounder (Paralichthys olivaceus). Ecotoxicology and Environmental Safety 233, https://doi.org/10.1016/j.ecoenv.2022.113337 | Characterization of the bioaccumulation and toxicity of copper pyrithione, an antifouling compound, on juveniles of rainbow trout | Charlotte Bourdon, Jérôme Cachot, Patrice Gonzalez, Patrice Couture | <p>Since the global ban on tributyltin in antifouling paints in 2008 by the International Maritime Organization, new products have been developed and brought to the market. Among them, copper pyrithione (CuPT) is used, but its mechanisms of toxici... | ![]() | Aquatic ecotoxicology, Bioassays, Biomarkers, Biomonitoring, Biotransformation, Environmental pollution | Claudia Cosio | Elise David, Anne-Sophie Voisin | 2023-02-01 15:23:44 | View |
22 Jul 2023
![]() DRomics, a workflow to exploit dose-response omics data in ecotoxicologyMarie Laure Delignette-Muller, Aurélie Siberchicot, Floriane Larras, Elise Billoir https://doi.org/10.1101/2023.02.09.527852New features of DRomics workflow for improved analyze of dose-response omics data in ecotoxicologyRecommended by Claudia CosioOur ability to anticipate and estimate how pollution affects components of ecosystems is of paramount importance in the field of ecotoxicology. Dose-response modeling is instrumental, as it allows deriving sensitivity thresholds used at the basis of regulatory risk assessment. In recent years, omics have highly influenced how the impacts of stressors are understood by revealing molecular changes at all levels of biota biological organization (Ebner et al., 2021). To allow analysis of omics data obtained using a typical dose-response design, DRomics a freely available tool for dose-response was proposed composed of both an R package and a free web application (Larras et al. 2018). Advances in this field depend both on theoretical concepts, technology and data integration. In this context, Delignette-Muller et al. (2023) address the question of how to better integrate omics information in dose-response questions. The paper lists previous possibilities of DRomics and presents new features. It is now able to handle all types of continuous omic and continuous non-omic data (e.g. growth data). This new version proposes new visualization tools, functional annotation and improved modeling workflow for a better robustness of analysis of data with few replicates. New features are meant to help for biological interpretation at the metabolic pathway level, to compare different measurements, biological materials or experimental settings. References Delignette-Muller, M. L., A. Siberchicot, F. Larras and E. Billoir (2023), DRomics, a workflow to exploit dose-response omics data in ecotoxicology. bioRxiv, 2023.2002.2009.527852, ver. 4 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2023.02.09.527852 Ebner JN. (2021) Trends in the Application of "Omics" to Ecotoxicology and Stress Ecology. Genes, 12(10):1481. https://doi.org/10.3390/genes12101481 Larras F, Billoir E, Baillard V, Siberchicot A, Scholz S, Wubet T, Tarkka M, Schmitt-Jansen M and Delignette-Muller ML (2018). DRomics: a turnkey tool to support the use of the dose-response framework for omics data in ecological risk assessment. Environmental science & technology, 52(24):14461. https://doi.org/10.1021/acs.est.8b04752 | DRomics, a workflow to exploit dose-response omics data in ecotoxicology | Marie Laure Delignette-Muller, Aurélie Siberchicot, Floriane Larras, Elise Billoir | <p style="text-align: justify;">Omics technologies has opened new possibilities to assess environmental risks and to understand the mode(s) of action of pollutants. Coupled to dose-response experimental designs, they allow a non-targeted assessmen... | ![]() | Aquatic ecotoxicology, Environmental risk assessment, Genetics / Genomics, Marine ecotoxicology, Microbial ecotoxicology, Modelling, Terrestrial ecotoxicology | Claudia Cosio | Rebecca Beauvais | 2023-02-17 15:39:03 | View |
29 Jul 2024
![]() Molecular response to multiple trace element contamination of the European sardineAnaïs Beauvieux, Jean-Marc Fromentin, Claire Saraux, Diego Romero, Nathan Couffin, Adrien Brown, Luisa Metral, Fabrice Bertile, Quentin Schull https://doi.org/10.1101/2024.02.16.580673Molecular-level responses highlight physiological stress in muscle and liver tissue of apparently healthy European sardine specimenRecommended by Davide Anselmo Luigi VignatiFish is an essential component of healthy human diets and the preservation of fish stocks and other marine resources is included as a target of Sustainable Development Goal 14 ‘Conserve and sustainably use the Oceans, Sea and Marine Resources for Sustainable Development’ (UNEP). However, several fish stocks remain in sub-optimal (or worse) conditions due to overfishing and a range of stressors including chemical pollution. Chemical pollution can result in high level of chemicals in fish making it unsuitable for human consumption. Furthermore, the occurrence of chemical-related physiological stress in otherwise apparently healthy fish requires additional research efforts. In natural environments, further complexity arises from fish being simultaneously exposed to multiple contaminants/stressors as opposed to laboratory investigation usually dealing with one or very few contaminants/stressors at a time (Schäfer et al., 2023). Beauvieux et al. (2024) examined the possible role of accumulation of multiple elements on the physiological status of first-year-of-life specimen of European sardine collected in the Gulf of Lions (northeastern Mediterranean Sea) as a contributing factor to the declining sardine population observed in the region since 2008. The ultimate objective of the paper was to identify potential biomarkers of stress in fish otherwise not exhibiting any anomalies in body condition, in agreement with the principles of chemical stress ecology put forward by van der Brink (2008). Out of a total of 105 specimen, individuals were selected according to the lowest (n = 14) or highest (n = 15) levels of contamination and subject to proteomic analysis of liver and red muscle tissues. A first Principal component analysis on all specimen highlighted the possible influence of the Rhone river as a source of geogenic and anthropogenic elements to the Gulf of Lions. A second PCA performed only on specimen selected from proteomics analysis allowed to identify three elemental mixtures possibly responsible for the observed physiological effects. Proteomic analysis in liver and muscle tissue identified both similarities and differences in the pathways involved in response to stress. More in detail, the expression patterns of Myosin and Myomesin were downregulated in red muscle for highly exposed specimen, which suggests possible effects of elemental accumulation on the locomotion abilities of Mediterranean sardines. Pathways involved in lipid metabolism and immune processes were up-regulated in liver, pointing to increased energetic costs for maintaining the overall fish homeostasis in presence of metal contamination. It is interesting to note that these effects were observed at concentrations below the legal thresholds for human consumption (except for As), albeit such thresholds are available only for a limited number of elements (Cd, Pb, Cd, As and inorganic Sn) (EU, 2023). Although stressors other than trace elements could contribute to the observed molecular responses, as acknowledged by the authors themselves, Beauvieux et al. (2024) show that biological responses at lower levels of biological organization can provide both early-warning indications of potential adverse effects in the long term and better understanding of drivers of population decline. By advancing our knowledge of the physiological responses to trace elements and identifying potential biomarkers, this study lays the groundwork for more effective monitoring and conservation strategies. Further studies addressing the combined effects of multiple environmental stressors remain essential to develop holistic approaches to marine ecosystem management and species conservation. References Beauvieux A., Fromentin J.-M., Saraux C., Romero D., Couffin N., Brown A., Metral L., Bertile F., Schull Q. (2024). Molecular response to multiple trace element contamination of the European sardine. bioRxiv, ver. 4 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2024.02.16.580673 EU (2023). Commission Regulation (EU) 2023/915. https://eur-lex.europa.eu/eli/reg/2023/915/oj/eng Schäfer R. B., Jackson M., Juvigny-Khenafou N., Osakpolor S. E., Posthuma L., Schneeweiss A., Spaak J., & Vinebrooke R. (2023). Chemical Mixtures and Multiple Stressors: Same but Different? Environmental Toxicology and Chemistry, 42(9), 1915-1936, https://doi.org/10.1002/etc.5629 UNEP: https://sdgs.un.org/goals Van den Brink P. J. (2008). Ecological Risk Assessment: From Book-Keeping to Chemical Stress Ecology. Environmental Science & Technology, 42(24), 8999-9004. https://doi.org/10.1021/es801991c | Molecular response to multiple trace element contamination of the European sardine | Anaïs Beauvieux, Jean-Marc Fromentin, Claire Saraux, Diego Romero, Nathan Couffin, Adrien Brown, Luisa Metral, Fabrice Bertile, Quentin Schull | <p>In marine ecosystems, the presence of trace elements resulting from anthropogenic activities has raised concerns regarding their potential effects on marine organisms. This study delves into the intricate relationship between trace element cont... | ![]() | Biomarkers, Environmental pollution, Marine ecotoxicology | Davide Anselmo Luigi Vignati | 2024-02-22 16:24:52 | View | |
02 May 2024
![]() Maternal body condition affects the response of larval spined toads' faecal microbiome to a widespread contaminantSabrina Tartu, Nicolas Pollet, Isabelle Clavereau, Gauthier Bouchard, Francois Brischoux https://doi.org/10.1101/2023.12.18.572122Effects of AMPA on Bufo spinosus microbiotaRecommended by Marie-Agnès Coutellec based on reviews by Fabrice Martin-Laurent, Lauris Evariste and 1 anonymous reviewerThe overall pollution of air, water, and soil is currently recognized as one of the five main drivers of biodiversity loss (IPBES 2019). Among chemicals, pesticides play a significant role in this global crisis, as recently re-assessed at the scale of France (Pesce et al. 2023). In this context, although parent molecules are subject to national and international regulations, based on a priori ecological risk assessment (e.g., REACH) as well as monitoring in some environments (see e.g., pesticides classified in the priority list of substances by the Water Frame Directive), pesticide metabolites are rarely considered. In the case of the widely used herbicide glyphosate, a particular concern is rising about its primary metabolite, aminomethylphosphonic acid (AMPA), due to its persistence and overlooked toxicity. Amphibians are the most threatened class of vertebrates on earth, with two in every five species considered threatened with extinction (IUCN Red List). While this overall decline has multiple causes, the contribution of pesticides is suspected to be significant in some regions. In this context, Tartu et al. (2024) studied the effects of AMPA on the gut microbiota of the spined toad, Bufo spinosus. This work complements a previous study which showed embryo mortality, oxidative stress, deformities at hatching, and delayed development (Tartu et al. 2022). Using a common garden experiment based on populations from contrasted habitats (agricultural vs woodland, same as in the previous study), the authors captured breeding pairs and collected the eggs laid in the laboratory. These were exposed to 0.4 µg/L AMPA during embryonic and larval development. Individual microbiota was analysed non-invasively, i.e., using the faeces collected in treatment vessels. Bacterial biodiversity was genetically assessed (16S rRNA). The community biomass and taxonomic structure were analysed as a function of chemical treatment, mother and father body condition (fat vs thin), as well as population of origin. As a primary effect, AMPA reduced the microbial biomass. Furthermore, a significant interaction was detected between AMPA and mother condition on the community structure and composition. This alteration, observed in « fat » females only, was reflected through a significant decrease in Bacteroidota and a significant increase in Actinobacteriota (the latter being consistent with the ability of some species in this phylum to use AMPA as a source of phosphorus). The higher sensitivity of tadpoles from females in better condition seems counterintuitive, since better body condition is expected to be associated with higher fitness (and possibly higher ability to face chemical stress), the authors discuss this in the light of the literature (which shows that microbiome-fitness relationships are not often evidenced in natural populations), and hypothesize that these females in better conditions host a microbiota that may be more efficient, yet also more sensitive to AMPA. Not ruling out other possible factors ignored in their study, in particular genotypic effects, the authors further discuss the importance of maternally transmitted effects via the microbiota. Altogether, the results published by Tartu et al. (2024) provide important new findings on AMPA toxicity to amphibian microbiota, and also confirm the occurrence of vertical transmission of the microbiota from mother to progeny in this vertebrate class. References IPBES (2019). Global assessment report on biodiversity and ecosystem services of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services. E. S. Brondizio, J. Settele, S. Díaz, and H. T. Ngo (editors). IPBES secretariat, Bonn, Germany. 1148 pages. https://doi.org/10.5281/zenodo.3831673 Pesce, S., Mamy, L., Sanchez, W., et al. (2023). Main conclusions and perspectives from the collective scientific assessment of the effects of plant protection products on biodiversity and ecosystem services along the land–sea continuum in France and French overseas territories. Environ Sci Pollut Res . https://doi.org/10.1007/s11356-023-26952-z Tartu, S., Renoirt, M., Cheron, M., Gisselmann, L.-L., Catoire, S., Brischoux, F. (2022). Did decades of glyphosate use have selected for resistant amphibians in agricultural habitats? Environ. Pollut. 310, 119823. https://doi.org/10.1016/j.envpol.2022.119823 Tartu, S., Pollet, N., Clavereau, I., Gauthier Bouchard, G., Brischoux, F. (2024). Maternal body condition affects the response of larval spined toads’ faecal microbiome to a widespread contaminant. bioRxiv, ver. 2 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2023.12.18.572122
| Maternal body condition affects the response of larval spined toads' faecal microbiome to a widespread contaminant | Sabrina Tartu, Nicolas Pollet, Isabelle Clavereau, Gauthier Bouchard, Francois Brischoux | <p>Glyphosate’s primary metabolite, aminomethylphosphonic acid (AMPA), is the most detected pollutant in surface waters. Recent studies have raised concerns about its toxicity, yet underlying mechanisms remain poorly understood. A disruption of th... | ![]() | Aquatic ecotoxicology, Environmental pollution | Marie-Agnès Coutellec | Lauris Evariste, Fabrice Martin-Laurent | 2023-12-19 10:32:45 | View |
21 May 2024
![]() Assimilation efficiencies and elimination rates of silver, cadmium and zinc accumulated by trophic pathway in Gammarus fossarumOphélia Gestin, Christelle Lopes, Nicolas Delorme, Laura Garnero, Olivier Geffard and Thomas Lacoue-Labarthe https://doi.org/10.1101/2023.07.14.549054Food type influences dietary metal uptake and elimination in Gammarus fossarumRecommended by Patrice CoutureGiven their narrow associations with human civilization, including urban, agricultural and industrial settings, freshwater systems worldwide are primary recipients of contaminants from anthropogenic origins, threatening biodiversity (Dudgeon 2019). Freshwater invertebrates are typically abundant in these environments. They are easily sampled, and several species can also be raised in the laboratory. Furthermore, they have the propensity to accumulate contaminants from their environments through both aqueous and dietary routes. These traits make them ideally suited as bioindicators of environmental contamination and for the study of the mechanisms of contaminant uptake and effects. Therefore, over the last decades, several studies have investigated the bioaccumulation and toxicity of a wide range of organic and inorganic contaminants. Knowledge of the relative importance of the aqueous and dietary exposure routes is key to understanding the processes involved in contaminant uptake and organismal and ecological consequences. Although the mechanisms of aqueous uptake have received much attention in recent literature, those associated with dietary uptake are far less known. This is the case for species commonly used for biomonitoring environmental contamination such as the amphipod Gammarus fossarum, and for metals of major concern for the Water Framework Directive (WFD) such as Ag, Cd and Zn. To address these knowledge gaps, Gestin et al (2024) investigated the assimilation efficiency (AE) of Ag, Cd and Zn from two contrasting types of food, one plant (alder leaves) and one invertebrate (Chironomus riparius larvae) for gammarids using a pulse-chase-feeding method in a laboratory setting. Food was radiolabeled and fed for a short period to gammarids (3 to 5 hours for alder leaves and 1 hour for chironomid larvae), after which they were left to depurate for 14 days, during which period they were fed with uncontaminated alder leaves. During the depuration period, gammarids were monitored to follow radioactivity using a gamma counter. A nonlinear least squares modelling approach was used to estimate assimilation efficiencies and elimination rates of the metals from each food source. References Dudgeon, D. (2019). Multiple threats imperil freshwater biodiversity in the Anthropocene. Current Biology 29(19):R960-R967. https://doi.org/10.1016/j.cub.2019.08.002 Gestin, O., Lopes, C., Delorme, N., Garnero, L., Geffard, O., Lacoue-Labarthe, T. (2024). Assimilation efficiencies and elimination rates of silver, cadmium and zinc accumulated by trophic pathway in Gammarus fossarum. bioRxiv, 2023.07.14.549054, ver.4 peer-reviewed and recommended by Peer Community In Ecotoxicology and Environmental Chemistry. https://doi.org/10.1101/2023.07.14.549054 | Assimilation efficiencies and elimination rates of silver, cadmium and zinc accumulated by trophic pathway in *Gammarus fossarum* | Ophélia Gestin, Christelle Lopes, Nicolas Delorme, Laura Garnero, Olivier Geffard and Thomas Lacoue-Labarthe | <p>To improve the assessment of metal toxicity in aquatic organisms, it is important to consider the different uptake pathways (i.e. trophic or aqueous). The bioaccumulation of dissolved metals such as Cd and Zn in gammarids is beginning to be wel... | ![]() | Aquatic ecotoxicology, Bioaccumulation/biomagnification | Patrice Couture | 2023-07-15 10:27:34 | View | |
03 Jul 2024
![]() Ecotoxicity of lanthanides to Daphnia magna: insights from elemental behavior and speciation in a standardized test mediumDavide A.L. Vignati, Loïc Martin, Laurence Poirier, Aurore Zalouk-Vergnoux, Chantal Fouque, Clément Bojic, Christophe Hissler, Carole Cossu-Leguille https://hal.univ-lorraine.fr/hal-04302491v3Lanthanide atomic mass and chemical behaviour in solution influence their solubility and ecotoxicity for Daphnia magna: Implications for risk assessment of aquatic organismsRecommended by Patrice CoutureThe demand for lanthanides (LN) has seen a steady increase and is anticipated to continue to grow. Due to their unique properties, they have become essential in key components of new technologies, such as batteries, wind turbines, electronic components and other devices needed to facilitate energy transition away from fossil fuels. These elements are also increasingly used in a range of new technologies, including medical applications and telecommunication. In this context, the concentrations of lanthanides are expected to increase in freshwater environments (Gwenzi et al., 2018). Our limited knowledge about the risk that they pose to organisms limits our ability to develop guidelines for environmental protection. Research on this issue has so far been hindered by the peculiar properties of lanthanides, that tend to form insoluble precipitates when added in standard ecotoxicological test media (Blinova et al., 2018). This and other challenges of studying lanthanide toxicity were addressed in this in-depth study that leaves few stones unturned. The study by Vignati and colleagues (2024) is the first to investigate the acute toxicity of all LN, with the exception of promethium, a radioactive element, on Daphnia magna, a model test species, following the ISO 6341 (2012) norm. The authors designed their study to generate data useable for the development of risk assessment guidelines for the LN series and to generate data-based recommendations for future studies on LN ecotoxicity. They exposed daphnids to nine to ten dilutions of all tested LN in a medium and carried out 48-hour acute immobilization assays. Initial and final pH was measured along with concentrations of LN in the test solutions sampled at various intervals by ICP-MS. This data allowed calculation of LN speciation, performed using VisualMinteq software. Effect concentrations were also calculated using different metrics based on initial (nominal), time-averaged or modelled LN3+ exposure concentrations. In their multi-faceted investigation, the authors reported several observations that clearly contribute to a better understanding of the ecotoxicity of LN to aquatic organisms and provide useful advice for future studies, briefly summarized here. Proper characterization of exposure concentrations is a key in any ecotoxicological study. Their project shows that even for a short, 48 h exposure, LN concentrations decrease due to a combination of precipitation and, possibly, adsorption. The concentration decrease was inversely proportional to the LN atomic mass, which may reduce the analytical requirements for future studies using the same test medium. The addition of LN to the test medium also modified pH and a detailed hypothesis is formulated to explain this phenomenon that has implications for ecotoxicological endpoints. Conclusions on LN ecotoxicity drawn in this study are based on experimental data and on extensive thermodynamic speciation modeling. The values of EC50 presented in the study varied by several order of magnitude depending on the chosen exposure metric, underscoring the urgent need for consensus-building on this issue across the research community. The authors also provide a comparison of their conclusions on EC50 values for daphnids with the limited data available in the literature, further validating their data with cautions carefully laid out about experimental design. The paper concludes with a list of seven caveats that should be considered both for regulators who will want to use the data presented in the paper for environmental LN concentrations regulations and for future studies. These caveats highlight the importance of considering LN speciation and chemical behavior during ecotoxicity assays, their influence on exposure concentrations, and their importance for risk assessment. They also reiterate that since LN concentrations in filtered water collected in the field are not directly comparable to EC50 values derived from laboratory studies using total or free LN3+ concentrations, an effort must be made to harmonize the methods of LN concentration measurements in field and laboratory studies. Overall, this paper may be one of the most rigorous studies in the current literature about LN ecotoxicity in freshwater systems. In its approach, it sets a precedent for future studies aiming at generating EC50 values or other toxicological endpoints of inorganic contaminants. The paper, carefully reviewed by Carrie Rickwood and by an anonymous reviewer, is a major contribution towards our understanding of LN ecotoxicity. Gwenzi, W., Mangori, L., Danha, C., Chaukura, N, Dunjana, N., Sanganyado, E. (2018). Sources, behaviour, and environmental and human health risks of high technology rare earth elements as emerging contaminants. Sci. Total Environ., 636:299-313. https://doi.org/10.1016/j.scitotenv.2018.04.235 ISO. (2012). Water quality — Determination of the inhibition of the mobility of Daphnia magna Straus (Cladocera, Crustacea) — Acute toxicity test (norm 6341). https://www.iso.org/standard/54614.html Vignati, D.A.L., Martin, L.A., Poirier, L., Zalouk-Vergnoux, A., Fouque, C., Clément, B., Hissler, C., Cossu-Leguille, C. (2024). Ecotoxicity of lanthanides to Daphnia magna: insights from elemental behavior and speciation in a standardized test medium. Ver.3 peer-reviewed and recommended by Peer Community In Ecotoxicology and Environmental Chemistry. https://hal.science/LIEC-UL/hal-04302491v3 | Ecotoxicity of lanthanides to *Daphnia magna*: insights from elemental behavior and speciation in a standardized test medium | Davide A.L. Vignati, Loïc Martin, Laurence Poirier, Aurore Zalouk-Vergnoux, Chantal Fouque, Clément Bojic, Christophe Hissler, Carole Cossu-Leguille | <p>Lanthanides (LNs) are a group of 15 elements with steadily increasing economical importance due to their multiple uses in technologies essential for sustainable ecological, digital and energetic transitions. Although knowledge on LN ecotoxicolo... | ![]() | Aquatic ecotoxicology, Chemical speciation | Patrice Couture | 2023-11-23 15:16:50 | View | |
09 Dec 2022
![]() Soot and charcoal as reservoirs of extracellular DNAStanislav Jelavic, Lisbeth Garbrecht Thygesen, Valerie Magnin, Nathaniel Findling, Sascha Müller, Viktoriia Meklesh, Karina Krarup Sand https://doi.org/10.26434/chemrxiv-2021-9pz8c-v5New insights into eDNA sorption onto environmental carbonaceous materialsRecommended by Pierre Labadie based on reviews by Jérôme Duval and 1 anonymous reviewerIn recent years, the use of environmental DNA (eDNA) to investigate biodiversity has gained considerable interest (Thomsen and Willerslev, 2015; Mauvisseau et al., 2022). It allows for the indirect detection of species but it requires a sound understanding of eDNA behaviour and persistence in the environment. This is, however, a complex task because eDNA may be found in several states (e.g., dissolved, adsorbed, intracellular or intraorganellar), which display specific decay rates controlled by environmental factors (Harrisson et al., 2019; Mauvisseau et al. 2022). In the environment, dissolved DNA may interact with the surfaces of various sorbents, including mineral and organic particles/colloids. Current knowledge on eDNA sorption suggests that eDNA–sorbent interactions are controlled by electrostatics as well as inner-sphere complex formation (Mauvisseau et al., 2022). In this context, the work undertaken by Jelavic et al. (2022), focused on the adsorption of eDNA by lesser-investigated carbonaceous materials (CMs), namely soot and charcoal, as common non-mineral environmental surfaces. The authors aimed to study the adsorption capacity of soot and charcoal surfaces with respect to eDNA, in relation to solution parameters (i.e., pH, ionic strength, concentration/type of cations), time and eDNA length, under both non‐equilibrium and equilibrium conditions. Using such an approach, Jelavic et al. demonstrated the large adsorption capacities of CMs and the strong binding of DNA to these sorbents. The authors did not provide definitive conclusions on the mechanisms of eDNA sorption onto CMs. However, they provided new elements suggesting that, along with electrostatic interactions, hydrophobic interactions might play an important role in the adsorption of eDNA to CMs such as soot and charcoal. Altogether, the results presented in this paper highlight the relevance of CMs as sources of biodiversity information. In addition, it is likely that those results will also prove useful for the community to improve protocols for eDNA extraction from environmental samples that contain high fractions of CMs, e.g. urban soils. References Harrison JB, Sunday JM, Rogers SM (2019) Predicting the fate of eDNA in the environment and implications for studying biodiversity. Proceedings of the Royal Society B: Biological Sciences, 286, 20191409. https://doi.org/10.1098/rspb.2019.1409 Jelavic S, Thygesen LG, Magnin V, Findling N, Müller S, Meklesh V, Sand KK (2022) Soot and charcoal as reservoirs of extracellular DNA. ChemRxiv, ver. 5 peer-reviewed and recommended by Peer Community in Ecotoxicology and Environmental Chemistry. https://doi.org/10.26434/chemrxiv-2021-9pz8c-v5 Mauvisseau Q, Harper LR, Sander M, Hanner RH, Kleyer H, Deiner K (2022) The Multiple States of Environmental DNA and What Is Known about Their Persistence in Aquatic Environments. Environmental Science & Technology, 56, 5322–5333. https://doi.org/10.1021/acs.est.1c07638 Thomsen PF, Willerslev E (2015) Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity. Biological Conservation, 183, 4–18. https://doi.org/10.1016/j.biocon.2014.11.019 | Soot and charcoal as reservoirs of extracellular DNA | Stanislav Jelavic, Lisbeth Garbrecht Thygesen, Valerie Magnin, Nathaniel Findling, Sascha Müller, Viktoriia Meklesh, Karina Krarup Sand | <p style="text-align: justify;">The vast potential of using sediment adsorbed DNA as a window to past and present biodiversity rely on the ability of solid surfaces to adsorb environmental DNA. However, a comprehensive insight into DNA adsorption ... | ![]() | Analytical Chemistry, Environmental chemistry, Environmental monitoring | Pierre Labadie | Anonymous, Jérôme Duval | 2022-04-13 16:08:36 | View |
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